Functional connectivity drifts during sleep as a marker of fluctuations in the level of consciousness
bioRxiv Preprint Server November 14, 2025 João Patriota, Giulia Moreni, Jorge Mejias et al. preprint
Consciousness is thought to fluctuate with the integration of brain areas across the wake-sleep cycle, but recent evidence suggests consciousness may not be uniformly present or absent within a given brain state, as conscious reports can occur during Non-REM sleep. This study tested whether functional connectivity between neurons varies within brain states in a way that reflects changing levels of consciousness. In rats, directed functional connectivity between neurons was examined across the wake-sleep cycle at a scale of a few seconds. The analysis aimed to determine whether Non-REM sleep contains epochs with inter-areal integration comparable to wakefulness and REM sleep, and vice versa. The findings could reveal circuit-level connectivity patterns consistent with alternating levels of consciousness both between and within brain states.