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Archives of Razi Institute

ISSN 2008-9872

2 papers in the library · publishing 2023

Papers

Molecular Docking, MM-GBSA, and Molecular Dynamics Approach: 5-MeO-DMT Analogues as Potential Antidepressants.

Archives of Razi Institute October 1, 2023 Rajagopal Kalirajan, Khare Rishabh, Jupudi Srikanth et al.

Depression affects an estimated 5% of people worldwide. The monoamine-deficiency hypothesis suggests that a deficiency of neurotransmitters like serotonin contributes to depression. The psychedelic compound 5-MeO-DMT elevates serotonin levels, improving life satisfaction and mindfulness while reducing depression, anxiety, and cortisol, but it has hallucinogenic effects. In this study, 70,000 analogues of 5-MeO-DMT were screened via high-throughput virtual screening and molecular docking against the 5-HT1A receptor. Glide XP docking showed 14 compounds had better binding affinity than 5-MeO-DMT (-7.75 kcal/mol), with Glide scores from -11.41 to -6.53 kcal/mol. MM-GBSA indicated 18 compounds had better binding free energy than the standard. Molecular dynamics simulations over 100 ns identified key stabilizing interactions with residues including Asp116, Phe361, and Trp358.

Molecular Docking, MM-GBSA, and Molecular Dynamics Approach: 5-MeO-DMT Analogues as Potential Antidepressants

Archives of Razi Institute April 4, 2023 Rajagopal, Kalirajan, Khare, Rishabh, Jupudi, Srikanth et al.

A computational study designed and screened 70,000 analogues of the psychedelic compound 5-MeO-DMT for potential antidepressant activity with fewer hallucinogenic side effects. Using molecular docking against the serotonin 1A receptor, 21 compounds showed binding scores from -11.41 to -6.53 kcal/mol; 14 of these bound more strongly than 5-MeO-DMT itself (-7.75 kcal/mol). Further analysis with MM-GBSA found 18 analogues had better binding free energy than the standard. Molecular dynamics simulations over 100 nanoseconds showed stable interactions with key receptor residues. The findings suggest several 5-MeO-DMT analogues merit further investigation as potential antidepressants.